Information for 13-GGTTGGCTGCGCC (Motif 20)

A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
Reverse Opposite:
A C T G A C T G A T G C A T C G A G T C C G T A A T C G A G T C A G T C C G T A C G T A A G T C A G T C
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 21.3bp
Average Position of motif in Background37.8 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGTTGGCTGCGCC
GTCATGCHTGRCTGS---
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGTTGGCTGCGCC-
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGTTGGCTGCGCC
--TWGTCTGV---
 A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGTTGGCTGCGCC
--TTGGCA-----
 A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GGTTGGCTGCGCC
NGTCACGCTTGGCTGC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGTTGGCTGCGCC
-NTTGGCANN---
 A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGTTGGCTGCGCC
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGGCTGCGCC
TGATTGGCTANN--
 A C G T A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GGTTGGCTGCGCC
---TGGGTGTGGC
 A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
A C G T A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGGCTGCGCC
CCGATTGGCT-----
 A C G T A C G T A C T G A C T G A C G T A C G T A C T G A C T G A T G C A C G T A C T G A T G C A T C G A G T C A G T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T