Information for 5-CAGCAGGSCWSCCACA (Motif 7)

A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
Reverse Opposite:
G A C T T C A G C G A T A T C G A T C G A T C G C G A T A T C G A T G C A G T C A T G C C G A T A T C G T G A C C G A T A T C G
p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.704
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif21.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets53.1 +/- 20.1bp
Average Position of motif in Background44.3 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGSCWSCCACA
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGSCWSCCACA
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGSCWSCCACA
DCTCAGCAGG---------
 A C G T A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGSCWSCCACA
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGSCWSCCACA
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGSCWSCCACA
CACAGCAGGGGG------
 A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGCAGGSCWSCCACA
NAACAGCTGG---------
 A C G T A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGCAGGSCWSCCACA
NAHCAGCTGD---------
 A C G T A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGCAGGSCWSCCACA
VCAGCTGBNN-------
 A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGSCWSCCACA
ANCAGCTG----------
 A C G T A C G T A T G C C G T A A C T G A T G C G C T A A T C G A C T G T A C G A T G C G C T A T A G C T A G C A T G C C G T A A G T C C T G A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T