Information for 4-CTGGCACTKAATAGGT (Motif 5)

A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
Reverse Opposite:
C G T A A T G C G T A C G A C T C G T A A C G T A C G T G T A C G C T A A T C G C G A T A C T G G A T C G A T C C T G A A C T G
p-value:1e-12
log p-value:-2.790e+01
Information Content per bp:1.663
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif20.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.2 +/- 23.4bp
Average Position of motif in Background51.3 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCACTKAATAGGT
TGTCTGDCACCT-------
 A C G T A C G T A C G T A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTGGCACTKAATAGGT
AATCGCACTGCATTCCG
 A C G T A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGGCACTKAATAGGT
--NSCACTYVAV----
 A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGGCACTKAATAGGT
VGCTGWCAVB--------
 A C G T A C G T A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTGGCACTKAATAGGT
CTGTCTGTCACCT-------
 A C G T A C G T A C G T A C G T A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTGGCACTKAATAGGT
CGAAGCACACAAAATA-
 A C G T A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTGGCACTKAATAGGT
-AASCACTCAA-----
 A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CTGGCACTKAATAGGT
--RSCACTYRAG----
 A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGGCACTKAATAGGT
-MRSCACTYAA-----
 A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACTKAATAGGT
CTTGGCAA---------
 A C G T A G T C G A C T C T A G C T A G A G T C C G T A A T G C C G A T C A T G T G C A G T C A G A C T C T G A A C T G A T C G C G A T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T