Information for 16-CAGCCWGCWRGRGASR (Motif 29)

A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
Reverse Opposite:
A G C T A T C G A C G T A G T C G A C T A G T C A G C T C G T A A C T G A G T C C G A T A C T G A C T G A G T C A C G T A C T G
p-value:1e-8
log p-value:-2.056e+01
Information Content per bp:1.849
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 14.4bp
Average Position of motif in Background60.7 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGCCWGCWRGRGASR
CCACACAGCAGGAGA--
 A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGCCWGCWRGRGASR
-DCHCAGCAGGRGGCC
 A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCWGCWRGRGASR
BCAGACWA---------
 A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGCCWGCWRGRGASR------
--GCCASCAGGGGGCGCYVNNG
 A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGCCWGCWRGRGASR
CAGCC-----------
 A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGCCWGCWRGRGASR
CCACACAGCAGGAGA--
 A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGCCWGCWRGRGASR
--CACAGCAGGGGG--
 A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGCCWGCWRGRGASR---
TGGCCACCAGGGGGCGCTA
 A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCWGCWRGRGASR
DCTCAGCAGG---------
 A C G T A C G T A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCWGCWRGRGASR
CCAGACAG---------
 A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A G T C G C A T C T G A A C T G C T G A A C T G C G T A A T G C C T G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T