Information for 3-CTGTTTTATGGATTTG (Motif 4)

A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
Reverse Opposite:
A G T C C G T A C G T A G T C A A C G T A G T C A G T C C G T A A C G T G T C A C G T A C G T A C G T A A T G C C G T A C T A G
p-value:1e-13
log p-value:-3.132e+01
Information Content per bp:1.910
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.5 +/- 11.9bp
Average Position of motif in Background64.9 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTTTATGGATTTG
NGANTTTTATGGCTCN-
 A C G T A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG
---TTTTATGGCTN--
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG--
----NTTATTGATTTTTT
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

ONECUT2/MA0756.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG--
----ATTATCGATTTTTT
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTTTATGGATTTG
NNANTTTTATTGGNNN-
 A C G T A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG
-DGWTTTATGRCN---
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG--
----ANTATCGATTTTTN
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG
--NTTTTATTGG----
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG
--NTTTTATTGG----
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTGTTTTATGGATTTG
---TTTTATTRGN---
 A G T C G A C T T A C G A C G T A C G T A C G T A C G T G T C A A C G T A C T G A C T G C G T A A C G T A C G T C G A T A C T G
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T