Information for 1-GACATTGTTC (Motif 7)

C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C
Reverse Opposite:
A C T G G T C A C G T A A G T C G T C A G T C A C G A T A C T G A G C T A G T C
p-value:1e-10
log p-value:-2.336e+01
Information Content per bp:1.856
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif34.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets68.6 +/- 18.3bp
Average Position of motif in Background49.2 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GACATTGTTC
NCCATTGTTC
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GACATTGTTC-
-CCATTGTTYB
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GACATTGTTC-
-YCTTTGTTCC
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GACATTGTTC
NCCATTGTTY
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GACATTGTTC
-CCATTGTTC
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GACATTGTTC-
-CCWTTGTYYB
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GACATTGTTC-
-CCATTGTTTT
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GACATTGTTC---
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GACATTGTTC-----
CNNNTATTGTTCNNNNN
 A C G T A C G T C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GACATTGTTC
---ATTGTT-
 C T A G T C G A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G T C
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T