Information for 3-GMRCWYWGMCYTYTGT (Motif 5)

A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A C T A G C G T A C T A G A C T G A C T G A G T C C G A T C T A G C G T A A C T G A G T C A C T G A G T C
p-value:1e-10
log p-value:-2.412e+01
Information Content per bp:1.810
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.8 +/- 35.5bp
Average Position of motif in Background56.8 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GMRCWYWGMCYTYTGT
-----CTGACCTTTG-
 A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.62
Offset:9
Orientation:forward strand
Alignment:GMRCWYWGMCYTYTGT---
---------CCTTTGTTTT
 A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GMRCWYWGMCYTYTGT
TGGACTTTGNNCTNTG-
 A C G T A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.61
Offset:9
Orientation:forward strand
Alignment:GMRCWYWGMCYTYTGT-
---------CCTTTGTT
 A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.60
Offset:9
Orientation:forward strand
Alignment:GMRCWYWGMCYTYTGT-
---------CCWTTGTY
 A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GMRCWYWGMCYTYTGT
TGACCTCTGACCCCN--
 A C G T A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GMRCWYWGMCYTYTGT
TGACCTTTGACCTC---
 A C G T A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GMRCWYWGMCYTYTGT------
-----TNNTCCTTTGTTCTNNT
 A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GMRCWYWGMCYTYTGT
GTTGACCTTTGACCTTT--
 A C G T A C G T A C G T A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.57
Offset:9
Orientation:forward strand
Alignment:GMRCWYWGMCYTYTGT---
---------CCWTTGTYYB
 A C T G G T A C T C A G A G T C C G A T A G T C C G T A A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G