Information for 1-GKMSACCAGGGTWCAC (Motif 3)

A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G G C T A G T C A A G T C A G T C A G T C A G C T C T A G C T A G A C G T A T C G A C T G G T A C A G T C
p-value:1e-11
log p-value:-2.648e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.7 +/- 21.3bp
Average Position of motif in Background55.9 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GKMSACCAGGGTWCAC---
TGGCCACCAGGTGGCACTNT
 A C G T A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GKMSACCAGGGTWCAC--
TGGCCACCAGGGGGCGCTA
 A C G T A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GKMSACCAGGGTWCAC
NNAGGGACAAGGGCNC--
 A C G T A C G T A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GKMSACCAGGGTWCAC-----
-GCCASCAGGGGGCGCYVNNG
 A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GKMSACCAGGGTWCAC----
---GGCGAGGGGTCAAGGGC
 A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GKMSACCAGGGTWCAC
NNGAGGTTACTNNAGGTCA-
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GKMSACCAGGGTWCAC
AAGGTCACGAAAGGTCA-
 A C G T A C G T A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GKMSACCAGGGTWCAC----
---NTNNNGGGGTCANGNNN
 A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Znf423/MA0116.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GKMSACCAGGGTWCAC
GGCACCCAGGGGTGC-
 A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GKMSACCAGGGTWCAC----
---CTCCAGGGGTCAATTGA
 A C T G A C T G G T A C A T G C C G T A A G T C A G T C C T G A A C T G C T A G A C T G A C G T C G A T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A