Information for 6-CCATGGCAAC (Motif 20)

A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C
Reverse Opposite:
A T C G C G A T A C G T A C T G A G T C A G T C G T C A A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.711e+01
Information Content per bp:1.863
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif151.4
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets48.2 +/- 22.8bp
Average Position of motif in Background48.5 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CCATGGCAAC
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CCATGGCAAC-
TTGCCATGGCAACN
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CCATGGCAAC-
TTGCCATGGCAACC
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CCATGGCAAC---
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGCAAC
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----CCATGGCAAC--
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGCAAC-
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CCATGGCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCATGGCAAC--
SCCTAGCAACAG
 A G T C A G T C C G T A A C G T C T A G A C T G G T A C C G T A C G T A T A G C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G