Information for 1-TGGWCTMCRGASA (Motif 1)

C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A
Reverse Opposite:
A C G T A T G C A C G T A G T C A G C T C T A G A C T G C G T A A C T G C G A T A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.986e+01
Information Content per bp:1.870
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.2 +/- 22.6bp
Average Position of motif in Background54.1 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGGWCTMCRGASA
NNATTGGACTTTNGNN-
 A C G T A C G T A C G T A C G T C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGGWCTMCRGASA-----
-CAAATCCAGACATCACA
 C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGGWCTMCRGASA-
------CCAGACAG
 C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGGWCTMCRGASA---
------CCAGACRSVB
 C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TGGWCTMCRGASA
AGAGRRACAGCWGAC-
 A C G T A C G T A C G T C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:6
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------TGGWCTMCRGASA
NNANTGGTGGTCTTNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G A C G T A C G T A C G T

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGGWCTMCRGASA---
-GTTCTCGCGAGANCC
 C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A A C G T A C G T A C G T
A C G T T A C G G A C T G A C T T G A C A G C T A G T C C A T G G T A C A C T G T C G A A C T G T C G A A C G T A G T C A T G C

GFX(?)/Promoter/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGGWCTMCRGASA--
---TCTCGCGAGAAT
 C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A A C G T A C G T
A C G T A C G T A C G T G A C T T G A C A C G T T A G C C A T G A G T C C A T G T C G A A C T G T C G A C T G A A G C T

PB0203.1_Zfp691_2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TGGWCTMCRGASA-
TACGAGACTCCTCTAAC
 A C G T A C G T A C G T C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TGGWCTMCRGASA
-NGTCCCNNGGGA
 C G A T C T A G A C T G G C T A A G T C A C G T G T A C A G T C C T G A A C T G C G T A A T C G C G T A
A C G T C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A