Information for 2-GCAAGGCTAG (Motif 10)

T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G
Reverse Opposite:
A G T C G A C T C T G A C A T G T G A C T A G C A G C T A C G T A C T G A T G C
p-value:1e-10
log p-value:-2.367e+01
Information Content per bp:1.593
Number of Target Sequences with motif178.0
Percentage of Target Sequences with motif20.58%
Number of Background Sequences with motif6032.2
Percentage of Background Sequences with motif12.68%
Average Position of motif in Targets54.4 +/- 25.5bp
Average Position of motif in Background50.2 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GCAAGGCTAG---
--AAGGCAAGTGT
 T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAAGGCTAG-
-CAAGGHCANV
 T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G A C G T
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCAAGGCTAG-
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAAGGCTAG
NTCAAGGTCA-
 A C G T T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAAGGCTAG
BTCAAGGTCA-
 A C G T T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCAAGGCTAG
-CTAGGCCT-
 T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCAAGGCTAG-
---AGGCCTNG
 T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G A C G T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCAAGGCTAG
CAAAGGTCAG
 T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCAAGGCTAG---
---ATGCCAGACN
 T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCAAGGCTAG
----NGCTN-
 T A C G T G A C T G C A T C G A A T C G A C T G G T A C G A C T C T G A T C A G
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T