Information for 1-SGCASGCWGMRMWRRC (Motif 3)

A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
Reverse Opposite:
A C T G A G T C A G C T C G A T A C T G A G C T A C T G A G T C G C A T A T C G A G T C A T C G A G C T A C T G A G T C A T G C
p-value:1e-13
log p-value:-3.135e+01
Information Content per bp:1.782
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets60.8 +/- 27.8bp
Average Position of motif in Background40.6 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-SGCASGCWGMRMWRRC
TBGCACGCAA-------
 A C G T A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:SGCASGCWGMRMWRRC
--CACGCA--------
 A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:SGCASGCWGMRMWRRC
--CCTGCTGAGH----
 A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-SGCASGCWGMRMWRRC
NNTCCTGCTGTGNNN--
 A C G T A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-SGCASGCWGMRMWRRC
TCNCCTGCTGNGNNN--
 A C G T A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:SGCASGCWGMRMWRRC
GGCACGCGTC------
 A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:SGCASGCWGMRMWRRC
-GCACGTNC-------
 A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:SGCASGCWGMRMWRRC
BGCACGTA--------
 A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:SGCASGCWGMRMWRRC
-GCACGTAY-------
 A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-SGCASGCWGMRMWRRC
TNTCCTGCTGTGNNG--
 A C G T A T C G A C T G A G T C C T G A A T G C C T A G A T G C C G T A A C T G G T A C C T G A G T A C C G T A C T G A C T A G A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T