p-value: | 1e-10 |
log p-value: | -2.481e+01 |
Information Content per bp: | 1.929 |
Number of Target Sequences with motif | 5.0 |
Percentage of Target Sequences with motif | 0.58% |
Number of Background Sequences with motif | 0.0 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 52.2 +/- 26.2bp |
Average Position of motif in Background | 0.0 +/- 0.0bp |
Strand Bias (log2 ratio + to - strand density) | 2.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
Match Rank: | 1 |
Score: | 0.67 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | AACTTGGGTCACG -AAYTAGGTCA-- |
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PB0157.1_Rara_2/Jaspar
Match Rank: | 2 |
Score: | 0.66 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -AACTTGGGTCACG-- AGAGCGGGGTCAAGTA |
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RORA(var.2)/MA0072.1/Jaspar
Match Rank: | 3 |
Score: | 0.66 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --AACTTGGGTCACG TATAAGTAGGTCAA- |
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MF0004.1_Nuclear_Receptor_class/Jaspar
Match Rank: | 4 |
Score: | 0.63 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | AACTTGGGTCACG -----AGGTCA-- |
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PB0153.1_Nr2f2_2/Jaspar
Match Rank: | 5 |
Score: | 0.63 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -AACTTGGGTCACG-- CGCGCCGGGTCACGTA |
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Pax2/MA0067.1/Jaspar
Match Rank: | 6 |
Score: | 0.62 |
Offset: | 6 |
Orientation: | forward strand |
Alignment: | AACTTGGGTCACG- ------AGTCACGC |
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FOS::JUN/MA0099.2/Jaspar
Match Rank: | 7 |
Score: | 0.60 |
Offset: | 4 |
Orientation: | reverse strand |
Alignment: | AACTTGGGTCACG ----TGAGTCA-- |
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Mitf/MA0620.1/Jaspar
Match Rank: | 8 |
Score: | 0.60 |
Offset: | 6 |
Orientation: | forward strand |
Alignment: | AACTTGGGTCACG--- ------GGTCACGTGG |
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PB0057.1_Rxra_1/Jaspar
Match Rank: | 9 |
Score: | 0.59 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -AACTTGGGTCACG--- NTNNNGGGGTCANGNNN |
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USF1/MA0093.2/Jaspar
Match Rank: | 10 |
Score: | 0.59 |
Offset: | 6 |
Orientation: | reverse strand |
Alignment: | AACTTGGGTCACG---- ------GGTCACGTGGC |
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