Information for 2-CATGCAGTCC (Motif 6)

T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C
Reverse Opposite:
A C T G T C A G G T C A A T G C C G A T T C A G G A T C G C T A A C G T A C T G
p-value:1e-11
log p-value:-2.762e+01
Information Content per bp:1.688
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif10.48%
Number of Background Sequences with motif2188.4
Percentage of Background Sequences with motif4.59%
Average Position of motif in Targets52.6 +/- 23.1bp
Average Position of motif in Background50.7 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CATGCAGTCC----
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATGCAGTCC-
AGATGCAATCCC
 A C G T T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C A C G T
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATGCAGTCC
CCTGCTGAGH
 T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CATGCAGTCC
TBGCACGCAA---
 A C G T A C G T A C G T T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATGCAGTCC--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CATGCAGTCC
CACGCA----
 T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CATGCAGTCC------------
--TGCAGTTCCNNNNNTGGCCA
 T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A C G G A T C G C T A T C A G G A C T C G A T G T A C G A T C G T C A T C G A T G A C C G T A C T A G G A C T C T A G C T A G G T A C A G T C C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CATGCAGTCC---
---CCAGACRSVB
 T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POL002.1_INR/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CATGCAGTCC-
---TCAGTCTT
 T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C A C G T
A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CATGCAGTCC--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T T G A C T G C A C G A T C T A G A G T C C G T A T A C G C A G T A G T C T G A C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G