Information for 12-AGGCTGGCACATT (Motif 22)

C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
Reverse Opposite:
C G T A C G T A A G C T A C T G A C G T A C T G A G T C A G T C C G T A A C T G A T G C A G T C G C A T
p-value:1e-6
log p-value:-1.494e+01
Information Content per bp:1.937
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.6 +/- 21.0bp
Average Position of motif in Background75.6 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTGGCACATT
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGGCTGGCACATT
-GGTTGGCAT---
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGGCTGGCACATT
TGTCTGDCACCT-
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGCTGGCACATT
CTGTCTGTCACCT-
 A C G T C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGGCTGGCACATT
--NTTGGCANN--
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGGCTGGCACATT
-NGTGGGCAT---
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGGCTGGCACATT
--CTTGGCAA---
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGGCTGGCACATT
--CCAGGAACAG-
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGGCTGGCACATT
---TTGGCA----
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGCTGGCACATT
-VGCTGWCAVB--
 C G T A A C T G A T C G A G T C A C G T A C T G A C T G A G T C C G T A A G T C C T G A A C G T A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T