Information for 10-TGGCCAGTAC (Motif 18)

A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
Reverse Opposite:
A C T G A C G T G T C A A G T C A C G T A C T G A C T G A G T C A G T C C G T A
p-value:1e-8
log p-value:-1.905e+01
Information Content per bp:1.882
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif82.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets42.7 +/- 17.9bp
Average Position of motif in Background49.8 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGGCCAGTAC
AAGGCAAGTGT
 A C G T A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGCCAGTAC
TTGGCA-----
 A C G T A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCAGTAC
NTTGGCANN---
 A C G T A C G T A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGGCCAGTAC
ACTAGCCAATCA
 A C G T A C G T A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGGCCAGTAC
TGCCCAGNHW
 A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

HES7/MA0822.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGCCAGTAC--
TGGCACGTGCCA
 A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C A C G T A C G T
G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCCAGTAC
TTGCCAAG---
 A C G T A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGGCCAGTAC-
-AGCCAATCGG
 A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

HES5/MA0821.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGCCAGTAC--
TGGCACGTGCCG
 A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C A C G T A C G T
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGGCCAGTAC
NNTTGGCANN---
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T A C C G T A C T A G A C G T T G C A A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T