Information for 7-CCAGTGTTGT (Motif 13)

A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
Reverse Opposite:
G T C A G A T C G T C A C T G A G T A C C T G A G T A C A C G T A C T G C T A G
p-value:1e-8
log p-value:-2.047e+01
Information Content per bp:1.835
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif104.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets40.9 +/- 21.6bp
Average Position of motif in Background53.3 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTGT
CCATTGTTYB
 A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTGT
CCTTTGTT--
 A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTGT
CCATTGTTC-
 A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCAGTGTTGT
NCCATTGTTC-
 A C G T A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CCAGTGTTGT--
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCAGTGTTGT----
TTCAATTGTTCTAAAA
 A C G T A C G T A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T A C G T A C G T A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CCAGTGTTGT
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTGT
CCATTGTTTT
 A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTGT
CCATTGTTNY
 A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCAGTGTTGT
NCCATTGTTY-
 A C G T A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C G T C T A G C A G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T