Information for 5-TCCGACAAGG (Motif 12)

A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G C T C T A G A C G T A T G C C T A G C T A G C G T A
p-value:1e-9
log p-value:-2.150e+01
Information Content per bp:1.880
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 30.2bp
Average Position of motif in Background54.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TCCGACAAGG-----
-----CAAGGHCANV
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TCCGACAAGG
----ACAAAG
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCCGACAAGG-
-CAGATAAGGN
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T
A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCGACAAGG-
-VRRACAAWGG
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCCGACAAGG----
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCCGACAAGG---
---BTCAAGGTCA
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCCGACAAGG---
---NTCAAGGTCA
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TCCGACAAGG--
--NNATAAGGNN
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

PB0022.1_Gata5_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCCGACAAGG----
TAAACTGATAAGAAGAT
 A C G T A C G T A C G T A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCCGACAAGG--
---GACAATGNN
 A C G T A G T C A G T C A T C G T C G A A G T C C T G A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G