Information for 21-AAAGTGCCAG (Motif 47)

C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T
p-value:1e-5
log p-value:-1.277e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif13.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.2 +/- 28.7bp
Average Position of motif in Background58.7 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AAAGTGCCAG---
-AGGTGHCAGACA
 C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AAAGTGCCAG-
GAAAAAATTGCAAGG
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAAGTGCCAG-
--CGTGCCAAG
 C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AAAGTGCCAG
CCAACTGCCA-
 A C G T C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAAGTGCCAG----
-AGGTGNCAGACAG
 C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTGCCAG
TTAAGTGC---
 A C G T C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AAAGTGCCAG--
---ATGCCAACC
 C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AAAGTGCCAG-
---TTGCCAAG
 C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAAGTGCCAG
-AGGTGTCA-
 C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AAAGTGCCAG
----TGCCAA
 C G T A C G T A C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A