Information for 24-AGTAATTACTATT (Motif 43)

C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
Reverse Opposite:
C G T A C G T A A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T
p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.855
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.5 +/- 13.4bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0072.1_Hoxc8/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----AGTAATTACTATT
TTGGGGTAATTAACGT-
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T A C G T

PH0061.1_Hoxb6/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--AGTAATTACTATT-
NNNGTAATTACNNATA
 A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T A C G T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

PH0053.1_Hoxa6/Jaspar

Match Rank:3
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----AGTAATTACTATT
NTNAGGTAATTACCTT-
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T A C G T

PH0071.1_Hoxc6/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----AGTAATTACTATT
NNTNATTAATTAATTTG
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
G C A T A C G T A G C T G C A T T G C A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A G C T C G A T G A C T T C A G

PH0052.1_Hoxa5/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----AGTAATTACTATT
NTGAGCTAATTACCNT-
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T A C G T

PH0062.1_Hoxb7/Jaspar

Match Rank:6
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----AGTAATTACTATT
TNNCATTAATTANTNC-
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGTAATTACTATT
GNTAATTAGN---
 C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C A C G T A C G T A C G T

PH0020.1_Dlx1/Jaspar

Match Rank:8
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AGTAATTACTATT
CTGAGGTAATTAAT---
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T A C G T A C G T A C G T

PH0049.1_Hoxa2/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AGTAATTACTATT
NTGAGCTAATTACCNT-
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T A C G T

PH0081.1_Pdx1/Jaspar

Match Rank:10
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AGTAATTACTATT
NTGNGCTAATTACCNN-
 A C G T A C G T A C G T A C G T C T G A C T A G A C G T C T G A C G T A A C G T A G C T C G T A A G T C A G C T C G T A A C G T C G A T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T A C G T