Information for 12-AGGYCAAAGCTRA (Motif 27)

C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
Reverse Opposite:
A C G T A G C T C G T A A C T G A G T C G C A T C A G T A C G T C T A G C T A G A T G C A T G C C G A T
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.691
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif160.8
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets46.5 +/- 23.2bp
Average Position of motif in Background50.2 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGYCAAAGCTRA
AAGGTCAC------
 A C G T C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGYCAAAGCTRA
TRAGGTCA-------
 A C G T A C G T C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGYCAAAGCTRA
GAGGTCAAAGGTCA
 A C G T C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

TBX15/MA0803.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGGYCAAAGCTRA
---TCACACCT--
 C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGYCAAAGCTRA
GAGGTCAAAGGTCA
 A C G T C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGYCAAAGCTRA--
AAAGGTCAAAGGTCAAC
 A C G T A C G T C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A A C G T A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGYCAAAGCTRA
GGGGTCAAAGGTCA
 A C G T C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGYCAAAGCTRA
GGGGTCAAAGGTCA
 A C G T C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

TBX1/MA0805.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGGYCAAAGCTRA
---TCACACCT--
 C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGYCAAAGCTRA
AGGTCA-------
 C G T A A T C G T A C G A G T C A G T C C G T A G T C A C G T A T C A G A G T C C G A T C T G A G T C A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T