Information for 9-AATTAGCAAC (Motif 21)

G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
Reverse Opposite:
T A C G G C A T A G C T A C T G A G T C A C G T G T C A C G T A C A G T A C G T
p-value:1e-10
log p-value:-2.436e+01
Information Content per bp:1.844
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif86.9
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets41.7 +/- 24.1bp
Average Position of motif in Background48.8 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AATTAGCAAC---
CCGCATAGCAACGGA
 A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------AATTAGCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AATTAGCAAC---
TACCATAGCAACGGT
 A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

GBX1/MA0889.1/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AATTAGCAAC
ACTAATTAGC---
 A C G T A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T A C G T A C G T

HESX1/MA0894.1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AATTAGCAAC
NCCAATTANC---
 A C G T A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AATTAGCAAC
TAATTAGN---
 A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AATTAGCAAC
GCTAATTAGC---
 A C G T A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C A C G T A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AATTAGCAAC
ACCAATTAGC---
 A C G T A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AATTAGCAAC
NNTAATTAGN---
 A C G T A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:10
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AATTAGCAAC
CCCAATTAGC---
 A C G T A C G T A C G T G T C A G T C A C G A T A C G T C G T A A C T G A G T C C T G A C G T A A T G C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T A C G T