Information for 18-TSTTWRSMASWGCAGK (Motif 20)

A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T
Reverse Opposite:
G T C A A G T C A C G T A T C G A T G C G C A T A T C G A C G T A C T G A T G C A G T C C G T A C G T A C G T A A T G C C G T A
p-value:1e-10
log p-value:-2.480e+01
Information Content per bp:1.800
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.2 +/- 24.1bp
Average Position of motif in Background54.2 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TSTTWRSMASWGCAGK---
-------CACAGCAGGGGG
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TSTTWRSMASWGCAGK------
-----NNNANTGCAGTGCNNTT
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TSTTWRSMASWGCAGK---
----GAGCACAGCAGGACA
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TSTTWRSMASWGCAGK-----
------DCHCAGCAGGRGGCC
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TSTTWRSMASWGCAGK---
----CCACACAGCAGGAGA
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

FOXP3/MA0850.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TSTTWRSMASWGCAGK
TGTTTAC---------
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T
A G C T T C A G A G C T G A C T C G A T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXD2/MA0847.1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TSTTWRSMASWGCAGK
TGTTTAC---------
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T
G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TSTTWRSMASWGCAGK
NYYTGTTTACHN-------
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T
A G C T A G T C A G T C A C G T C T A G A C G T A C G T A C G T C G T A A G T C G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TSTTWRSMASWGCAGK
------DCTCAGCAGG
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Tcf21/MA0832.1/Jaspar

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TSTTWRSMASWGCAGK---
-----GCAACAGCTGTTGT
 A C G T A T C G A C G T A C G T C G A T C T A G T A C G G T A C C G T A A T G C C G T A A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T