Information for 15-GKCTTTRTMKRSCASM (Motif 16)

A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
Reverse Opposite:
A C G T A T G C A C G T A C T G A T G C A G C T T G C A A C T G C G T A A G C T C G T A C G T A C G T A C T A G G T A C A G T C
p-value:1e-11
log p-value:-2.544e+01
Information Content per bp:1.802
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.2 +/- 16.9bp
Average Position of motif in Background9.1 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GKCTTTRTMKRSCASM
--CTTTGT--------
 A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GKCTTTRTMKRSCASM
-CCWTTGTYYB-----
 A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GKCTTTRTMKRSCASM
AGGVNCCTTTGT--------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GKCTTTRTMKRSCASM
ANTCCTTTGTCTNNNN--
 A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GKCTTTRTMKRSCASM
-YCTTTGTTCC-----
 A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GKCTTTRTMKRSCASM
-CCWTTGTY-------
 A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GKCTTTRTMKRSCASM
-CCTTTGTTTT-----
 A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GKCTTTRTMKRSCASM-
-----TGTCTGDCACCT
 A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GKCTTTRTMKRSCASM
NNNNNNCTTTTATAN------
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GKCTTTRTMKRSCASM
NNNNNNCTTTTATAN------
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T C T G A A C G T G T A C A C G T C T G A A T C G G T A C C G T A T A C G G T C A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T