Information for 12-CAGACTGGCCTTYTCC (Motif 12)

A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
Reverse Opposite:
C A T G T C A G C T G A C T G A T G C A T C G A T C A G A T C G A T G C T G A C G C T A A C T G A C G T T A G C C G A T T A C G
p-value:1e-11
log p-value:-2.664e+01
Information Content per bp:1.598
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.34%
Number of Background Sequences with motif719.1
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets51.6 +/- 24.1bp
Average Position of motif in Background49.8 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGACTGGCCTTYTCC
-NNACTTGCCTT----
 A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGACTGGCCTTYTCC
AGCAACAGCCGCACC------
 A C G T A C G T A C G T A C G T A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGGCCTTYTCC
CCAGACRSVB-------
 A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGGCCTTYTCC
NNGGCCACGCCTTTN--
 A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGGCCTTYTCC
CCAGACAG---------
 A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGGCCTTYTCC
BCAGACWA---------
 A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAGACTGGCCTTYTCC
---CNAGGCCT-----
 A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTGGCCTTYTCC
GGTCANNGTGACCTN----
 A C G T A C G T A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTGGCCTTYTCC
TCCCAGMCRAGCCCC----
 A C G T A C G T A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CAGACTGGCCTTYTCC
CAAATCCAGACATCACA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C T A A T C G T G C A T A G C C G A T A C T G T A C G T A G C A G T C A G C T A C G T G A C T G A C T A G T C G T A C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T