Information for 2-CACGTGGGCGCVCGTC (Motif 6)

A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
Reverse Opposite:
A C T G T C G A A G T C A C T G A T G C A C T G A G T C A C T G A T G C A G T C A G T C G T C A A G T C A C T G C G A T A C T G
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.863
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 25.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGGGCGCVCGTC
TCACGTGACC-------
 A C G T A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGGGCGCVCGTC
TCACGTGACCGG-----
 A C G T A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CACGTGGGCGCVCGTC
CACGTGGN--------
 A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGGGCGCVCGTC
CCACGTGGNN-------
 A C G T A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CACGTGGGCGCVCGTC
GCACGTGA---------
 A C G T A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGGGCGCVCGTC
CCACGTGGNN-------
 A C G T A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CACGTGGGCGCVCGTC
NVCACGTG----------
 A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACGTGGGCGCVCGTC
CACGTG----------
 A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACGTGGGCGCVCGTC
CACGTGNC--------
 A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CACGTGGGCGCVCGTC
GHCACGTG----------
 A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G C T A G A T C G A G T C A C T G A G T C T A C G A G T C C T A G A G C T A G T C
C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T