Information for 10-CTCCTGGCAWCCC (Motif 18)

A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C
Reverse Opposite:
A T C G C A T G A C T G C G T A A G C T A C T G A G T C A G T C C G T A A C T G A C T G C T G A C T A G
p-value:1e-8
log p-value:-1.876e+01
Information Content per bp:1.853
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif21.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets75.2 +/- 19.6bp
Average Position of motif in Background41.4 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CTCCTGGCAWCCC
TGTTKCCTAGCAACM-
 A C G T A C G T A C G T A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTCCTGGCAWCCC
-SCCTAGCAACAG
 A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTCCTGGCAWCCC
--CTTGGCAA---
 A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CTCCTGGCAWCCC
NNNCTTTCCAGGAAA---
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTCCTGGCAWCCC-
--SCTGTCARCACC
 A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C A C G T
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTCCTGGCAWCCC
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCCTGGCAWCCC-
TACCATAGCAACGGT
 A C G T A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CTCCTGGCAWCCC-----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCCTGGCAWCCC
CTTCCNGGAA----
 A C G T A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCCTGGCAWCCC-
CCGCATAGCAACGGA
 A C G T A G T C A G C T A G T C A G T C C G A T C T A G A C T G A G T C C T G A C G A T A G T C G T A C A T G C A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A