Information for 7-CTTTTSARAKMAT (Motif 13)

A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G G T A C C G A T A G C T A C G T T A C G G T C A C G T A C G T A C G T A A C T G
p-value:1e-9
log p-value:-2.245e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.0 +/- 25.7bp
Average Position of motif in Background66.8 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTTTTSARAKMAT
CGGTTTCAAA----
 A C G T A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:2
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTTSARAKMAT
NTNTTCTTATCAGTNTN-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTTTTSARAKMAT
CCTTTGATGT---
 A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTTTTSARAKMAT
-ATTTGAATT---
 A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTTTTSARAKMAT
AACCTTATAT------
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTTTTSARAKMAT
CCTTTTATAGNC-
 A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTTTTSARAKMAT--
ATTTGCATACAATGG
 A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTTTTSARAKMAT---
ACTATGAATGAATGAT
 A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTTTTSARAKMAT-
--TTTCTNAGAAAN
 A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T A C G T
A C G T A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTTTTSARAKMAT
-ATTTCCAAGAA-
 A G T C A C G T A C G T A C G T A C G T A T G C C G T A C T G A C G T A A C T G G T A C C G T A A C G T
A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T