Information for 16-CTCCTGGTGAGTGTGV (Motif 30)

A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
Reverse Opposite:
A T C G A G T C T C G A A G T C T C G A T A G C A C G T A T G C T C G A A T G C A G T C C T G A A C T G A C T G G C T A T A C G
p-value:1e-8
log p-value:-1.986e+01
Information Content per bp:1.687
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif39.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets47.9 +/- 33.0bp
Average Position of motif in Background53.5 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGAGTGTGV
TNTCCTGCTGTGNNG--
 A C G T A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGAGTGTGV
TCNCCTGCTGNGNNN--
 A C G T A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CTCCTGGTGAGTGTGV-
-----RGTGGGYGTGGC
 A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G C A G T C T A G A T C G A C T G G A T C C A T G A C G T C A T G A C T G A G T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGAGTGTGV
CCCCCTGCTGTG-----
 A C G T A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCCTGGTGAGTGTGV
--CCTGCTGAGH----
 A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTCCTGGTGAGTGTGV
GGCCYCCTGCTGDGH----
 A C G T A C G T A C G T A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGAGTGTGV
NNTCCTGCTGTGNNN--
 A C G T A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTCCTGGTGAGTGTGV
---CAGGTAAGTAT--
 A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C
A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CTCCTGGTGAGTGTGV-
-------TGGGTGTGGC
 A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTCCTGGTGAGTGTGV----
----NNGCGTGTGTGCNGCN
 A T G C C A G T G T A C T G A C A G C T A C T G A T C G A G C T A T C G T C G A A T C G A C G T T A C G A C G T A C T G T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T