Information for 21-GACCTTACTAGTT (Motif 40)

C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T
Reverse Opposite:
C G T A C T G A A G T C A C G T C T G A C T A G A C G T G C T A C G T A C T A G C T A G C G A T A G T C
p-value:1e-5
log p-value:-1.354e+01
Information Content per bp:1.741
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif14.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets59.1 +/- 23.4bp
Average Position of motif in Background60.9 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0028.1_En1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GACCTTACTAGTT---
GNATTAATTAGTTNNC
 C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PH0005.1_Barhl1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GACCTTACTAGTT---
GNNTTAATTGGTTGTT
 C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

PH0149.1_Pou3f4/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GACCTTACTAGTT----
GANTTAATTAATTAANN
 C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

PH0058.1_Hoxb3/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GACCTTACTAGTT---
TGAGCTAATTAGTTGGA
 A C G T C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

PH0142.1_Pou1f1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GACCTTACTAGTT----
GANTTAATTAATTANNN
 C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GACCTTACTAGTT
--GTTAACTAGN-
 C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GACCTTACTAGTT---
NNNTTAATTGGTTTTN
 C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PH0147.1_Pou3f2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACCTTACTAGTT---
NNNACTAATTAATTANC
 A C G T C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

PH0040.1_Hmbox1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GACCTTACTAGTT---
GANGTTAACTAGTTTNN
 A C G T C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PH0154.1_Prrx1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GACCTTACTAGTT--
ANNAGTTAATTAGTTAN
 A C G T A C G T C T A G C G T A A G T C A G T C A C G T C G A T C G T A A G T C A G C T T C G A T A C G A G C T A C G T A C G T A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C