Information for 5-CATAATTKCWTTTGTN (Motif 6)

A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C C G T A C G T A C G T A C G A T A T C G G T C A G T C A C G T A C G A T C G A T C T G A A C G T A T C G
p-value:1e-13
log p-value:-3.156e+01
Information Content per bp:1.779
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 20.9bp
Average Position of motif in Background45.1 +/- 0.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CATAATTKCWTTTGTN
--TAATTNVATTAN--
 A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
A C G T A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CATAATTKCWTTTGTN
--TAATYNRATTAR--
 A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
A C G T A C G T G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G A C G T A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CATAATTKCWTTTGTN
--TAATTAAATTA---
 A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
A C G T A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A A C G T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CATAATTKCWTTTGTN
--TAATTAAATTA---
 A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T A C G T A C G T

PROP1/MA0715.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CATAATTKCWTTTGTN
--TAATTAAATTA---
 A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
A C G T A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATAATTKCWTTTGTN
NNNTTAATTGGTTTTT--
 A C G T A C G T A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CATAATTKCWTTTGTN
NNNTTAATTGGTTTTN--
 A C G T A C G T A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.59
Offset:8
Orientation:forward strand
Alignment:CATAATTKCWTTTGTN--
--------CCATTGTTNY
 A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.58
Offset:8
Orientation:forward strand
Alignment:CATAATTKCWTTTGTN
--------CCWTTGTY
 A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CATAATTKCWTTTGTN
CCTTAATNGNTTTT---
 A C G T A T G C C G T A A G C T C G T A C G T A A C G T A C G T A C G T A T G C C G T A C G A T A C G T C G A T A C T G A C G T A G T C
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T A C G T A C G T