Information for 13-CAAATTAGCTCGG (Motif 25)

A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
Reverse Opposite:
A G T C G T A C T C A G C T G A A C T G A G T C G A C T C T G A T G C A A C G T A C G T A C G T A T C G
p-value:1e-9
log p-value:-2.146e+01
Information Content per bp:1.676
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif149.5
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets44.1 +/- 30.0bp
Average Position of motif in Background47.5 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0094.1_Lhx4/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCTCGG
TAAACTAATTAGCTTTG
 A C G T A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G

PH0098.1_Lhx8/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCTCGG
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0045.1_Hoxa1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAAATTAGCTCGG
ACGGTAATTAGCTCAG
 A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G

PH0127.1_Nobox/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CAAATTAGCTCGG
GNTNNCTAATTAGNNCG-
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
T A C G C T G A C G A T C G T A T G A C A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A G T C A T C G T A G C A T C G A C G T

GBX1/MA0889.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAAATTAGCTCGG
ACTAATTAGC----
 A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T A C G T A C G T A C G T

PH0032.1_Evx2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAAATTAGCTCGG
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

PH0074.1_Hoxd1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCTCGG
TAAACTAATTAGCTGTA
 A C G T A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

PAX4/MA0068.2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAAATTAGCTCGG
CTAATTAG-----
 A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T A C G T A C G T

PH0131.1_Pax4/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCTCGG
TGAACTAATTAGCCCAC
 A C G T A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
G C A T T A C G T C G A C G T A A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G A T C A G T C T A G C C T G A G T A C

PH0155.1_Prrx2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CAAATTAGCTCGG
NTTCGCTAATTAGCTNT-
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A C G T A T C G A A C G T A G C T C G T A T C A G G T A C G A C T A G T C C A T G A C T G
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T A C G T