Information for 5-TGCCACCTAAGCA (Motif 9)

C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G C T C A G T C G T A A C T G A C T G C G A T A C T G A C T G A G T C C G T A
p-value:1e-12
log p-value:-2.866e+01
Information Content per bp:1.778
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.6 +/- 28.0bp
Average Position of motif in Background31.5 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCCACCTAAGCA
ATGCCAACC-----
 A C G T C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TGCCACCTAAGCA
ACTATGCCAACCTACC-
 A C G T A C G T A C G T A C G T C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCCACCTAAGCA
ATGCCACGTCATCA
 A C G T C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCCACCTAAGCA
CGTGCCAAG------
 A C G T A C G T C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGCCACCTAAGCA
GGTGCCAAGT-----
 A C G T A C G T C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCCACCTAAGCA
TGCCAA-------
 C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCCACCTAAGCA
TTGCCAAG------
 A C G T C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCACCTAAGCA
TGACACCT-----
 C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCCACCTAAGCA
ATGCCCACC-----
 A C G T C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCCACCTAAGCA
TGTCANYT-----
 C G A T A C T G A G T C T G A C C G T A T G A C A G T C G A C T G C T A C T G A A C T G T A G C C G T A
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T