Information for 23-CGCACACATAGCGCTC (Motif 42)

A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A G T C A C T G A G T C A C G T C G T A A C G T A C T G A C G T A C T G A C G T A C T G A G T C A C T G
p-value:1e-6
log p-value:-1.437e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.7 +/- 19.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGCACACATAGCGCTC
CGAAGCACACAAAATA---
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGCACACATAGCGCTC-----
----CGAACAGTGCTCACTAT
 A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CGCACACATAGCGCTC-
-----ACAAAGGNBCCT
 A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CGCACACATAGCGCTC
AGCGGCACACACGCAA---
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------CGCACACATAGCGCTC
TACATGTGCACATAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:6
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CGCACACATAGCGCTC
-TCACACCT-------
 A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:CGCACACATAGCGCTC
-GRACAGWMTGTYCTB
 A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:8
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:CGCACACATAGCGCTC
KCCAAAAATAGC----
 A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:CGCACACATAGCGCTC
CRCCCACGCA------
 A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:10
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:CGCACACATAGCGCTC
--NACATATGGN----
 A G T C A C T G A G T C C G T A A G T C C G T A A G T C C G T A A C G T C G T A A C T G A G T C A C T G A G T C A C G T A G T C
A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T A C G T A C G T A C G T