Information for 14-CACCAGCCAWCCNCCA (Motif 24)

A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
Reverse Opposite:
A G C T A C T G T C A G A C G T A C T G C T A G C G T A A C G T C T A G T A C G G A T C A C G T A C T G A T C G C A G T A C T G
p-value:1e-9
log p-value:-2.229e+01
Information Content per bp:1.736
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.6 +/- 20.7bp
Average Position of motif in Background62.9 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RREB1/MA0073.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CACCAGCCAWCCNCCA---
CCCCAAACCACCCCCCCCCA
A C G T A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACCAGCCAWCCNCCA
--BCAGACWA------
A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CACCAGCCAWCCNCCA
CAAATCCAGACATCACA--
A C G T A C G T A C G T A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CACCAGCCAWCCNCCA
TACACCTGTC--------
A C G T A C G T A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
C A G T T C G A A G T C C T G A A T G C T A G C C G A T T C A G A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACCAGCCAWCCNCCA
TCCCAGMCRAGCCCC-
A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CACCAGCCAWCCNCCA
NNCACCTGNN--------
A C G T A C G T A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CACCAGCCAWCCNCCA
--CCAGACAG------
A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CACCAGCCAWCCNCCA
CGCCCCCTGACA-------
A C G T A C G T A C G T A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CACCAGCCAWCCNCCA
SNGCACCTGCHS-------
A C G T A C G T A C G T A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CACCAGCCAWCCNCCA-
--SCAGYCADGCATGAC
A G T C G T C A T A G C G T A C C G T A C A T G A T G C A G T C G T C A G C A T A G T C G T A C G T C A A G T C G T A C T C G A A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C