Information for 9-ACTGCCATCAAHA (Motif 13)

C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
Reverse Opposite:
G A C T C G T A A C G T C G A T A C T G C G T A A C G T A C T G A C T G A G T C C G T A A C T G A C G T
p-value:1e-11
log p-value:-2.575e+01
Information Content per bp:1.849
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.0 +/- 16.2bp
Average Position of motif in Background36.1 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ACTGCCATCAAHA----
TCACCCATCAATAAACA
 C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Myb/MA0100.2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACTGCCATCAAHA
CCAACTGCCA------
 A C G T A C G T A C G T C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ACTGCCATCAAHA
--GGCCATTAAC-
 C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ACTGCCATCAAHA
GTCCGCCATTA---
 A C G T C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ACTGCCATCAAHA
CGACCAACTGCCATGC---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACTGCCATCAAHA----
ACGGCCATAAAATTAAT
 C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACTGCCATCAAHA
CCAACTGCCA------
 A C G T A C G T A C G T C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACTGCCATCAAHA
-AAGCCATAAAA-
 C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ACTGCCATCAAHA
--HNRAATCAAT-
 C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACTGCCATCAAHA
-YTGWCADY----
 C G T A A G T C C G A T A C T G G T A C A G T C C G T A A C G T A G T C C G T A C G T A G A C T C T G A
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T A C G T