Information for 3-AGAAAAMAAAKGC (Motif 5)

C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
Reverse Opposite:
A T C G G A T C G T A C G A C T A G C T C G A T A C G T G A C T A G C T A C G T A C G T G T A C C G A T
p-value:1e-28
log p-value:-6.580e+01
Information Content per bp:1.741
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.19%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets50.5 +/- 24.5bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AGAAAAMAAAKGC
--AAAACAAAGG-
 C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AGAAAAMAAAKGC
TACTGGAAAAAAAA---
 A C G T A C G T A C G T A C G T C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----AGAAAAMAAAKGC
CAAAAGTAAACAAAG--
 A C G T A C G T A C G T A C G T C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AGAAAAMAAAKGC-
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGAAAAMAAAKGC
AGAAACGAAAGT-
 C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAAAAMAAAKGC---
ATAAGAACAAAGGACTA
 A C G T C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGAAAAMAAAKGC---
AGAAGAACAAAGGACTA
 A C G T C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGAAAAMAAAKGC
--AAAACAATGG-
 C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGAAAAMAAAKGC
----AACAAAGG-
 C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGAAAAMAAAKGC
AAAAAGTAAACAAAGAC
 A C G T A C G T A C G T A C G T C G T A C A T G C G T A C G T A C T G A C T G A G T C A C G T A C T G A C T G A A C T G C T A G T A G C
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C