Information for 2-AAGCTTAAGA (Motif 4)

G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A
Reverse Opposite:
C G A T A G T C G C A T C G A T G T C A G C T A C A T G A G T C G C A T C G A T
p-value:1e-29
log p-value:-6.804e+01
Information Content per bp:1.437
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.52%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets45.8 +/- 27.2bp
Average Position of motif in Background71.8 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AAGCTTAAGA
CAAGCTT----
 A C G T G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAGCTTAAGA
-NGCTN----
 G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AAGCTTAAGA---
---CTYRAGTGSY
 G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGCTTAAGA------
AATNTTAAGTGGNTNN
 G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGCTTAAGA
NGGATTAA--
 G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AAGCTTAAGA------
AANTTCAAGTGGCTTN
 G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PB0184.1_Tbp_2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AAGCTTAAGA---
GNNCGCTTAAATCGG
 A C G T A C G T G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A A C G T A C G T A C G T
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AAGCTTAAGA
VRGGATTARN-
 A C G T G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AAGCTTAAGA---
---BTBRAGTGSN
 G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAGCTTAAGA
RGGATTAR--
 G C T A C G T A T C A G G T A C C G A T C A G T G C T A C G T A T C A G G C T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T