Information for 4-TCTCAGAACTTAAATT (Motif 38)

G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T
Reverse Opposite:
G C T A G C T A C G A T C G A T G C A T G C T A C G T A C T A G C G A T C G A T G A T C C G A T C A T G C G T A C T A G C G T A
p-value:1e-7
log p-value:-1.797e+01
Information Content per bp:1.429
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets42.8 +/- 22.4bp
Average Position of motif in Background34.5 +/- 9.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCTCAGAACTTAAATT
TACTAAGTACTTAAATG
 A C G T G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0116.1_Nkx2-9/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCTCAGAACTTAAATT
TTTTAAGTACTTAAATT
 A C G T G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TCTCAGAACTTAAATT-
------TAATTAAATTA
 G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCTCAGAACTTAAATT
TTTCTNAGAAAN------
 A C G T A C G T G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TCTCAGAACTTAAATT
------NATTCAAAT-
 G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TCTCAGAACTTAAATT-
------TAATTAAATTA
 G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCTCAGAACTTAAATT
CNTTAAGTACTTAANG-
 A C G T G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCTCAGAACTTAAATT--
--TAGGTAATAAAATTCA
 G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T A C G T A C G T
A C G T A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TCTCAGAACTTAAATT
----GAAAMTGAAACT
 G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T
A C G T A C G T A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

Lhx3/MA0135.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TCTCAGAACTTAAATT---
------AAATTAATTAATC
 G C A T G A T C G C A T G T A C G C T A C T A G G C T A G C T A G A T C G C A T C G A T C G T A G C T A G C T A C G A T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C