Information for 3-GCWGTTNCTGWGAGAG (Motif 4)

A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G
Reverse Opposite:
A G T C A C G T T A G C C G A T G T A C C G T A G T A C C G T A A C T G C G T A G C T A T G C A A G T C C G A T A C T G A G T C
p-value:1e-14
log p-value:-3.281e+01
Information Content per bp:1.753
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.4 +/- 26.5bp
Average Position of motif in Background38.6 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GCWGTTNCTGWGAGAG--
------CCTTTTATAGNC
 A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GCWGTTNCTGWGAGAG
------GCTGTG----
 A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GCWGTTNCTGWGAGAG----
TTCAGCACCATGGACAGCGCC
 A C G T A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:4
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCWGTTNCTGWGAGAG-
-----TGCTGASTCAGC
 A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G T G A C G C A T C A T G C G T A T A G C G A C T G A T C C T G A A T C G A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.49
Offset:9
Orientation:forward strand
Alignment:GCWGTTNCTGWGAGAG-
---------TTGACAGC
 A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---GCWGTTNCTGWGAGAG-
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-GCWGTTNCTGWGAGAG
AGATGCTRCTRCCHT--
 A C G T A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:8
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:GCWGTTNCTGWGAGAG----
TCAGCACCATGGACAGCTCC
 A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

PB0195.1_Zbtb3_2/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:GCWGTTNCTGWGAGAG-
-CAATCACTGGCAGAAT
 A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T
A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.48
Offset:9
Orientation:forward strand
Alignment:GCWGTTNCTGWGAGAG-
---------TTGACAGG
 A C T G A G T C C G T A C T A G A C G T C G A T A C G T A G T C A C G T A C T G C G A T A C T G C G T A A T C G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G