Information for 12-CGCTATCTGCCAT (Motif 29)

A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T
Reverse Opposite:
C T G A C A G T C T A G A C T G A T G C C G T A A C T G T G C A G C A T C G T A C T A G A T G C T A C G
p-value:1e-7
log p-value:-1.780e+01
Information Content per bp:1.706
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif191.0
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets59.3 +/- 24.7bp
Average Position of motif in Background48.9 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGCTATCTGCCAT--
--CTGTCTGTCACCT
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CGCTATCTGCCAT--
------CTGCCCGCA
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGCTATCTGCCAT
CTGGCAGNCTGCCA-
 A C G T A C G T A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGCTATCTGCCAT--
----GTCCGCCATTA
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGCTATCTGCCAT--
CGACCAACTGCCATGC
 A C G T A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGCTATCTGCCAT
--CCAACTGCCA-
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T
A C G T A C G T A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CGCTATCTGCCAT--
---TGTCTGDCACCT
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CGCTATCTGCCAT
--CCAACTGCCA-
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T
A C G T A C G T A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T

Gata4/MA0482.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGCTATCTGCCAT
TCTTATCTCCC--
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T
A G C T A T G C A G C T A C G T G T C A A C G T A G T C C G A T A T G C G A T C A G T C A C G T A C G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGCTATCTGCCAT
YSTTATCT-----
 A G T C T A C G A G T C C G A T C G T A A C G T A G T C A C G T A T C G G T A C A G T C G T C A A G C T
A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T A C G T A C G T A C G T A C G T A C G T