Information for 16-ATTYATTGCCTAAAGA (Motif 18)

T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
Reverse Opposite:
A C G T A T G C A G C T A G C T A C G T G C T A A C T G A C T G T A G C C G T A G C T A A C G T C T A G C G T A C G T A A C G T
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.720
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets58.8 +/- 22.1bp
Average Position of motif in Background55.2 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATTYATTGCCTAAAGA
NAATTTTATTACCTNN---
 A C G T A C G T A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ATTYATTGCCTAAAGA
NAATTTTATTACCNNN---
 A C G T A C G T A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATTYATTGCCTAAAGA
TGATTTATGGCC------
 A C G T A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ATTYATTGCCTAAAGA
TGATTTATGGCC------
 A C G T A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATTYATTGCCTAAAGA
NTGATTTATGGCC------
 A C G T A C G T A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----ATTYATTGCCTAAAGA
TNAATTTTATTACCTN----
 A C G T A C G T A C G T A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ATTYATTGCCTAAAGA
TTTTATGGCTN-----
 T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATTYATTGCCTAAAGA
NTTTTATTACN------
 A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ATTYATTGCCTAAAGA
DGWTTTATGRCN------
 A C G T A C G T T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ATTYATTGCCTAAAGA
TTTTATTGC-------
 T G C A A C G T C G A T A G T C C G T A C A G T A C G T A T C G G T A C A G T C C A G T G T C A C T G A C T G A A T C G G T C A
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T