Information for 7-GCAAAGGWCGYAK (Motif 11)

A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
Reverse Opposite:
G T C A A C G T T C G A A G T C A T C G C G A T A G T C A G T C A C G T A C G T A C G T A T C G A G T C
p-value:1e-11
log p-value:-2.556e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 26.5bp
Average Position of motif in Background42.4 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCAAAGGWCGYAK
ANGNAAAGGTCA---
 A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCAAAGGWCGYAK
TAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGGWCGYAK-
TCTCAAAGGTCACGAG
 A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCAAAGGWCGYAK
TGGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGGWCGYAK-
TCTCAAAGGTCACCTG
 A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAAAGGWCGYAK
-AACAGGAAGT--
 A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAGGWCGYAK
GTAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAAAGGWCGYAK
-CAAAGGTCAG--
 A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGGWCGYAK-
TCGCGAAGGTTGTACT
 A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAGGWCGYAK
AGAGTCCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A G T C A C G T A A C T G A C T G C G T A A T G C C T A G A G C T C G T A A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T