Information for 4-AGAAGCAAGAAAG (Motif 9)

C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G
Reverse Opposite:
G T A C A C G T G C A T A C G T A G T C C G A T A C G T A C T G A G T C A C G T A C G T A T G C A C G T
p-value:1e-13
log p-value:-3.051e+01
Information Content per bp:1.859
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.4 +/- 23.0bp
Average Position of motif in Background63.2 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGAAGCAAGAAAG
NGAAGC-------
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGAAGCAAGAAAG-----
GGAAGGAAGGAAGGAAGG
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGAAGCAAGAAAG-----
GAAGTANCACGAATNMRAGT
 A C G T A C G T C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGAAGCAAGAAAG
--ATGCCAGACN-
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGAAGCAAGAAAG
-GWAAYHTGABMC
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGAAGCAAGAAAG
-GWAAYHTGAKMC
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGAAGCAAGAAAG--
TGACANARRCCAGRC
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.49
Offset:2
Orientation:forward strand
Alignment:AGAAGCAAGAAAG
--AAGCCATAAAA
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:AGAAGCAAGAAAG---
--AAAGATCAAAGGAA
 C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGAAGCAAGAAAG-
ARGAGGMCAAAATGW
 A C G T C G T A A T C G G T C A C G T A C T A G A G T C G T C A C G T A A C T G G T C A C G T A C G T A A C T G A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T