Information for 13-GAGAWCATTA (Motif 26)

A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A
Reverse Opposite:
A G C T C G T A T C G A A G C T A T C G C G T A G A C T T A G C C G A T T G A C
p-value:1e-8
log p-value:-2.058e+01
Information Content per bp:1.609
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.71%
Number of Background Sequences with motif900.2
Percentage of Background Sequences with motif1.94%
Average Position of motif in Targets50.8 +/- 25.7bp
Average Position of motif in Background48.5 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGAWCATTA-
-AGCTCATTAT
 A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T
A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

EVX2/MA0888.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGAWCATTA--
--GGTAATTAGC
 A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T
A C G T A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GAGAWCATTA--
----YCATTAMC
 A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGAWCATTA-----
GGAGGTCATTAATTAT
 A C G T A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

EVX1/MA0887.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGAWCATTA--
--GGTAATTAGC
 A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T
A C G T A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

PH0020.1_Dlx1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGAWCATTA--
CTGAGGTAATTAAT
 A C G T A C G T A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGAWCATTA--
TGGAGGTAATTAAC
 A C G T A C G T A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAGAWCATTA------
GANGTAATTAATTANN
 A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T

HOXB2/MA0902.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGAWCATTA--
--AGTAATTAAC
 A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T A C G T
A C G T A C G T T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C

PDX1/MA0132.2/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGAWCATTA-
---GTAATTAG
 A C T G C G T A A T C G C T G A G C A T T A G C T C G A A G C T C G A T C T G A A C G T
A C G T A C G T A C G T T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G