Information for 5-CGSGKCTTTRTGCCYM (Motif 23)

A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
Reverse Opposite:
A C T G T C A G A C T G C T A G A G T C C G T A G A C T G T C A C G T A C G T A A C T G G T A C A G T C A T C G A G T C A C T G
p-value:1e-5
log p-value:-1.375e+01
Information Content per bp:1.857
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 19.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CGSGKCTTTRTGCCYM
----YCTTTGTTCC--
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGSGKCTTTRTGCCYM
----CCWTTGTYYB--
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CGSGKCTTTRTGCCYM
-----CTTTGT-----
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.56
Offset:9
Orientation:forward strand
Alignment:CGSGKCTTTRTGCCYM--
---------ATGCCCACC
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CGSGKCTTTRTGCCYM
-----TTTTATGGCTN
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CGSGKCTTTRTGCCYM
----CCTTTGTTTT--
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CGSGKCTTTRTGCCYM
AGGVNCCTTTGT-----
 A C G T A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CGSGKCTTTRTGCCYM
----NTTTTATGAC--
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CGSGKCTTTRTGCCYM
---DGWTTTATGRCN-
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CGSGKCTTTRTGCCYM
CTTGGCANNNTGCCAA
 A G T C A C T G A T G C A C T G A C T G A G T C A C G T A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C T G A C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A