Information for 3-CGCAGCGACAAGTGCA (Motif 19)

T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A
Reverse Opposite:
A C G T C T A G T A G C C G T A A T G C C A G T C G A T A T C G A C G T A T G C A C T G A G T C C G A T A C T G A T G C A T C G
p-value:1e-8
log p-value:-1.914e+01
Information Content per bp:1.683
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif28.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.9 +/- 17.7bp
Average Position of motif in Background50.0 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CGCAGCGACAAGTGCA
--CAGCC---------
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hes2/MA0616.1/Jaspar

Match Rank:2
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CGCAGCGACAAGTGCA
--TAACGACACGTGC-
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A
A C G T A C G T A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CGCAGCGACAAGTGCA
CACAGN----------
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CGCAGCGACAAGTGCA----
---ATCCACAGGTGCGAAAA
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

MTF1/MA0863.1/Jaspar

Match Rank:5
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CGCAGCGACAAGTGCA--
----GTGCCGTGTGCAAA
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

SCRT2/MA0744.1/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CGCAGCGACAAGTGCA
--ATGCAACAGGTGG-
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A
A C G T A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:CGCAGCGACAAGTGCA
------NTCAAGTGG-
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T

ID4/MA0824.1/Jaspar

Match Rank:8
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:CGCAGCGACAAGTGCA
------GACAGGTGTN
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

PB0044.1_Mtf1_1/Jaspar

Match Rank:9
Score:0.48
Offset:4
Orientation:forward strand
Alignment:CGCAGCGACAAGTGCA----
----GGGCCGTGTGCAAAAA
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.48
Offset:4
Orientation:forward strand
Alignment:CGCAGCGACAAGTGCA---
----GAAAAAATTGCAAGG
 T A G C A T C G G T A C C G T A C T A G T G A C T A C G G T C A A T G C G C T A G C T A A T C G G A C T A C T G G A T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G