Information for 5-AVKWAAGMTAATYWCY (Motif 11)

C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T
Reverse Opposite:
C T G A C T A G C G A T C T A G C G T A A C G T G A C T C G T A C A T G G T A C C G A T C A G T G C T A T G C A A C G T G C A T
p-value:1e-9
log p-value:-2.186e+01
Information Content per bp:1.653
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif172.7
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets43.1 +/- 27.7bp
Average Position of motif in Background48.8 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0045.1_Hoxa1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AVKWAAGMTAATYWCY--
--CTGAGCTAATTACCGT
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T A C G T A C G T
A C G T A C G T A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

EVX1/MA0887.1/Jaspar

Match Rank:2
Score:0.71
Offset:6
Orientation:reverse strand
Alignment:AVKWAAGMTAATYWCY
------GNTAATTANN
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

MEOX2/MA0706.1/Jaspar

Match Rank:3
Score:0.71
Offset:6
Orientation:reverse strand
Alignment:AVKWAAGMTAATYWCY
------NTTAATTACN
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T

EVX2/MA0888.1/Jaspar

Match Rank:4
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:AVKWAAGMTAATYWCY
------NNTAATTANN
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

PH0053.1_Hoxa6/Jaspar

Match Rank:5
Score:0.70
Offset:4
Orientation:forward strand
Alignment:AVKWAAGMTAATYWCY----
----AAGGTAATTACCTAAT
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

PH0049.1_Hoxa2/Jaspar

Match Rank:6
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AVKWAAGMTAATYWCY--
--NTGAGCTAATTACCNT
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T A C G T A C G T
A C G T A C G T G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T

DUXA/MA0884.1/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AVKWAAGMTAATYWCY
--CTAATTTAATCAA-
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T
A C G T A C G T G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A A C G T

HOXB2/MA0902.1/Jaspar

Match Rank:8
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:AVKWAAGMTAATYWCY
------NNTAATTANN
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T C G A T C T G A C G T A A G C T A C G T C T G A A T G C A G C T

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AVKWAAGMTAATYWCY---
--NANANTTAATCCCNNNN
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T A C G T A C G T A C G T
A C G T A C G T C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0081.1_Pdx1/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AVKWAAGMTAATYWCY--
--NTGNGCTAATTACCNN
 C G T A T G A C A C G T C G A T G T C A C G T A A C T G G T A C C G A T C T G A C G T A A C G T A G T C C G T A G A T C A G C T A C G T A C G T
A C G T A C G T G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T