Information for 3-CAGGCTGATA (Motif 6)

A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A
Reverse Opposite:
A C G T C G T A A G C T A T G C C T G A A T C G G A T C A G T C C G A T A C T G
p-value:1e-13
log p-value:-3.054e+01
Information Content per bp:1.834
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif71.9
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets50.6 +/- 30.6bp
Average Position of motif in Background55.6 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGGCTGATA
CCTGCTGAGH
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0022.1_Gata5_1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGGCTGATA-------
TAAACTGATAAGAAGAT
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGGCTGATA
TWGTCTGV--
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

GATA5/MA0766.1/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CAGGCTGATA---
-----AGATAAGA
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A

PB0105.1_Arid3a_2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAGGCTGATA-----
NNATNTGATANNNNN
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGGCTGATA---
---NBWGATAAGR
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAGGCTGATA
--NGCTN---
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGGCTGATA
NNNANTGA--
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGGCTGATA
--GGCVGTTR
 A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A
A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCTGATA
CACAGN------
 A C G T A C G T A G T C C G T A C T A G C T A G A T G C A G C T A T C G C T G A C G A T T G C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T