Information for 10-STGGGTCCTGACCTMC (Motif 14)

A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C
Reverse Opposite:
A C T G A C G T T C G A A C T G A T C G A C G T A G T C C G T A A C T G T A C G C G T A A T G C A T G C A G T C G T C A T A G C
p-value:1e-8
log p-value:-2.055e+01
Information Content per bp:1.740
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.9 +/- 28.2bp
Average Position of motif in Background38.9 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.68
Offset:8
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC
--------TGACCT--
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.66
Offset:8
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC
--------TGACCYCT
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC--
--------TGACCTTGAT
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC
--------TGACCTYA
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC-----
-------TTGACCTANTTATN
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC--
--------TGACCTARTT
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC-
----CNNTTGACCTTTG
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C A C G T
A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:STGGGTCCTGACCTMC
-------GTGACCTT-
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-STGGGTCCTGACCTMC
AGGNCANNGTGACCT--
 A C G T A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:STGGGTCCTGACCTMC
-----TGCTGACTCA-
 A T C G A C G T C T A G T A C G A T C G G A C T A T G C G T A C A C G T A C T G C G T A A T G C G T A C A G C T T G C A A G T C
A C G T A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A A C G T